![]() ![]() ![]() If you need to change this, see the section "Varying the installation location" near the end of this page for more info. Accept the default location (~/miniconda3).You will be asked to confirm the licence agreement, to choose an installation location, and to decide whether it should run "conda init". Module unload jaspy Creating a base environment You cannot have your own conda environment activated at the same time as Jaspy, so it is recommended that if you have loaded the jaspy module, then you start by typing: It is possible as an alternative to use the full Anaconda, but your initial base environment will be much bigger if you do that (at time of writing this installs 5GB, compared to 400MB with miniconda) so we suggest the use of miniconda. ![]() ![]() In order to create your own conda environments, you will first need to download the miniconda installer. To decide whether you should use a Python virtual enviro nment or a Conda environment, first see the page: overview of software environments. This page gives detail on how to create and use your own personal Conda environments via the miniconda installer, as an alternative to the use of Jaspy. On JASMIN, we provide a wide range of packages via the Jaspy environment (which is itself a Conda environment). If possible, use only conda environment.Creating and using miniconda environments NOTE Loading the conda environment can lead to conflits with the 'module load' command, therefore users should test the environment on a running job when using both conda and modules environments. home/csys/jpina/miniconda2/etc/profile.d/conda.sh # Call parallell environment "mp", and excute in 4 cores # Load user environment during job excution Load conda environment in your submission script $ cat test_submit.sh home/csys/jpina/miniconda2/etc/profile.d/conda.shĦ. In order to continue the installation process, please review the licenseĭo you wish the installer to initialize Miniconda2Ĥ. Execute Miniconda $ chmod +x Miniconda2-latest-Linux-x86_64.sh (give execution permission fo file) Download Miniconda into your local home $ wget ģ. Small tutorial on how to install and run miniconda on the HPC clusters. ![]()
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